J-L. David, Erasistratus discovering the cause of Antiochus' disease.
Ecole nationale supérieure des beaux-arts, Paris

 

First International Advanced Research
Workshop on
In Silico Oncology: Advances and Challenges
(1st IARWISO)

September 9-11 , 2004
Sparta ,
Greece

Co-Directors
N. Uzunoglu,
National Technical University of Athens
and D. Givol, , The Weizmann Institute of Science

Organizing Committee
N. Uzunoglu, D. Givol, N. Zamboglou, G. Stamatakos

Enquiries: gestam@central.ntua.gr

UPDATED: SEPTEMBER 1, 2004

 

INVITED SPEAKERS

 

Akay M ., Dartmouth College , Thayer School of Engineering, Hanover , NH , USA
Alcalay M ., European Institute of Oncology, Department of Experimental Oncology, Milan , Italy
Alger J.R. , UCLA, David Geffen School of Medicine, Department of Radiology, Los Angeles , CA , USA
Audretsch W ., Interdisciplinary Breast Center , Women's Hospital, Duesseldorf , Germany
Dale R. , Imperial College School of Medicine and Hammersmith Hospitals , London , UK
Deisboeck T., Harvard-MIT (HST) Athinoula Martinos Center, Massachusetts General Hospital, Charlestown, MA, USA
Domany E ., The Weizmann Institute of Science, Center for Systems Biology, Rehovot , Israel
Duechting W. , University of Siegen , Institute of Control Engineering, Siegen , Germany
Givol D. , The Weizmann Institute of Science, Department of Molecular Cell Biology, Rehovot , Israel
Kozlov, A.P ., St. Petersburg University, Res. Inst. of Pure Biochemicals, St. Petersburg , Russian Federation
Moschovi M., First Dept. of Padiatrics, Medical School, University of Athens, Athens, Greece
Nagl S ., University College London , Department of Oncology, London , UK
Rechavi G ., Sheba Medical Center–Tel Hashomer and Sackler School of Medicine, Tel Aviv University , Israel
Stamatakos G.S ., Institute of Communication and Computer Systems, Department of Electrical and Computer Engineering, National Technical University of Athens, Greece
Uzunoglu N., Institute of Communication and Computer Systems, Department of Electrical and Computer Engineering, National Technical University of Athens, Greece
Zamboglou N. , Klinikum Offenbach, Radiation Therapy Clinic, Offenbach , Germany

 

PROPOSED DEFINITION OF IN SILICO ONCOLOGY

 

The emerging discipline of In Silico (Computational) Oncology can be defined as the combination of advanced mathematical and computational methods, techniques and simulation tools (bioinformatics/biocomputing) with experimental and clinical knowledge pertinent to the development and progression of cancer with the aim of better understanding and treating the disease.

As an analytical approach to the natural phenomenon of cancer, In Silico Oncology could be founded on principles analogous to the Newton’s Principles of Natural Philosophy. Therefore, it is highly important to develop and formulate fundamental algorithmic oncological “laws”. This is one of the principal aims of the workshop.

“Leonidas”, Archaeological Museum of Sparta

 

PURPOSE

 

The 1 st International Advanced Research Workshop on In Silico Oncology: Advances and Challenges will establish an international medium for the exchange of new computationally-oriented ideas and experimental and clinical experience in the vast area of Oncology. Contribution to the shaping of the emerging discipline of In Silico Oncology is one of the main goals of the workshop.

 

Archaeological Museum of Sparta

 

SCOPE

 

The basic topics that will be covered in the Workshop are as follows:

A. Shaping the emerging discipline of In Silico Oncology (ISO)

A.1 Definition and Scope of ISO
A.2 Basic and Applied Character of ISO
A.3 Historical Perspective

B. ISO at the Molecular Level of Complexity

B.1 Cancer Bioinformatics/Biocomputing at the Molecular Level
B.2 Modelling Chemotherapy and Radiotherapy at the Molecular Level
B.3 Modelling Other Treatment Modalities at the Molecular Level

C. ISO at the Cellular and Higher Level(s) of Complexity

C.1 Cancer Bioinformatics/Biocomputing at the Cellular and Higher Level(s) of Complexity
C.2 Modelling Chemotherapy and Radiotherapy at the Cellular and Higher Level(s) of Complexity
C.3 Modelling Other Treatment Modalities at the Cellular and Higher Level(s) of Complexity

D. Clinical Applications of ISO

D.1 Diagnostics
D.2 Treatment Planning
D.3 Medical Education
D.4 Patient Education

E. General Discussion, Conclusions and Perspectives

E.1 General Discussion
E.2 Conclusions
E.3 Perspectives

 

PROGRAMME

 

   

WEDNESDAY, SEPTEMBER 8, 2004

 

ARRIVAL OF PARTICIPANTS AT SPARTA

(Details will be available on the workshop website

and on an individual basis by electronic mail.

Enquiries: gestam@central.ntua.gr)

------------------------------------------------------------------------------------- 

THURSDAY, SEPTEMBER 9, 2004

 

 

7:30 am – 8:00 am (Reception Hall)
REGISTRATION

8:00 am – 10:30 am (Amphitheater)
OPENING CEREMONY
Chairs: N. Uzunoglu, D. Givol, G. Stamatakos

 

1. N.K.Uzunoglu, National Technical University of Athens, Athens , Greece , In Silico Oncology: An emerging interdisciplinary approach to cancer understanding and treatment (Welcome Speech)

 

2. Reading of a message from the Greek Minister of National Education and Religious Affairs Mrs M. Giannakou

 

3. K. Fourkas, Prefect of Laconia , Message to the Workshop Participants

 

4. S. Antonakos, Mayor of Sparta , Message to the Workshop Participants

 

5. G. Stamatakos, National Technical University of Athens, Athens, Greece, Sparta in heavens, on earth, in myth and in history

 

6. N.K.Uzunoglu, National Technical University of Athens, Athens, Greece, Ancient Greek and Byzantine science, technology and medicine

 

7. D.Givol, The Weizmann Institute of Science, Rehovot , Israel , Cancer biology and therapy (Honorary Speech)

 

PLEASE NOTE: The opening ceremony is open to the general public. Opening ceremony speeches (except for some messages) will be delivered in English. Short summaries in Greek will also be made. Messages in Greek will be translated into English. English will be the exclusive language of the main body of the Workshop.

 

10:30 am-11:00 am

Coffee Break

 

 

 

 

 

PLEASE NOTE: Names of presenting authors are underlined. Paper numbers refer to the paper order as appearing in the Book of Short Communications. That order reflects an increasing biosystem complexity (from the molecular to the cellular to the tissue etc. level of complexity). However, due to practical limitations, the oral presentation of papers will not strictly follow the same order. Each speaker (either invited or proferred paper presenter) will be allowed 30 min to make his or her presentation. After completion of each presentation 5 min will be allowed for discussion.

 

 

11:00 am-12:10 pm (Upper Floor)

SESSION A

Chair : M. Akay

 

11:00-11:35 am

Paper No 2

G. Rechavi , Sheba Medical Center, Tel Hashomer, Israel , Life and death decisions in normal and cancer cells

 

11:35 am – 12:10 pm

Paper No 6

N. Meani , A. Gardini, S. Licciulli, G. Scafetta, H. Muller, P. Pelicci and M. Alcalay*,

*European Institute of Oncology, Milan , Italy , Analysis of gene expression patterns in Acute Myeloid Leukemia: clues to leukemogenesis

 

12:10 pm-1:30 pm

Lunch (Lida Hotel)

 

1:30 pm - 2:40 pm (Upper Floor)

SESSION B

Chair : W. Audretsch

 

1:30 pm-2:05 pm

Paper No 3

S.Nagl, University College London, London, UK, Modelling of cancer gene-signal systems  

 

2:05 pm – 2:40 pm

Paper No 4

D. Givol, The Weizmann Institute of Science, Rehovot, Israel, Design principle of gene expression used by embryonic and adult s tem cells; Implications for cancer stem cells

2:40 pm-3:00 pm

Coffee Break

 

 3:00 pm– 4:10 pm (Upper Floor)

SESSION C

Chair : R. Dale

 

3:00 pm-3:35 pm

Paper No 21

W. Audretsch , Interdisciplinary Breast Center , Duesseldorf , Germany , Breast translational oncoplastics

 

3:35 pm – 4:10 pm

Paper No 20
V.E.Kouloulias, University of Athens, Athens, Greece, Fractionation of radiotherapy in glioblastoma multiforme: A clinico-radiobiological approach

 

4:10 pm – 5:00 pm (Upper Floor)

Round Table Discussion : Shaping In Silico Oncology: Part I

Chairs: N. Uzunoglu, D. Givol, J. Alger, G. Stamatakos

 

SOCIAL PROGRAMME

 

PLEASE NOTE: Details will be available during the Workshop, well before the events take place.

 

I. Guided Tour of the medieval/Byzantine city of Mystras

 

II. Guided Tour of the Leonidas Cenotaph and the Acropolis of Sparta

 

III. 9:30 pm: Official Dinner offered by the Demos (Municipality) of Sparta at the Menelaion Hotel

 

-----------------------------------------------------------------------------------------------------

FRIDAY, SEPTEMBER 10, 2004

 

 

8:30 am – 9:00 am (Reception Hall)
REGISTRATION

9:00 am – 10:10 am (Upper Floor)

SESSION D

Chair: A. Kozlov

 

9:00 am – 9:35 am

Paper No 1

E. Domany, The Weizmann Institute of Science, Rehovot , Israel , Analysis gene expression data: Application to studies of several types of cancer

 

9:35 am– 10:10 am

Paper No 5

G. Potamias* , A. Analyti, D. Kafetzopoulos, M. Tsiknakis, D. Plexousakis, P. Poirazi, M. Reczko, Y. Tollis, E. Sanidas, E. Stathopoulos, S. Vassilaros, * University of Crete, Heraklion, Greece, Breast cancer, microarrays and biomedical informatics: The Prognochip Project

 

10:10 am – 10:30 am

Coffee Break

 

10:30 am – 11:40 am

SESSION E

Chair: S. Nagl

 

10:30 am – 11:05 am

Paper No 7

A.P. Kozlov* , T.V. Tyazhelova, L.L. Kroukovskaya, D.E.Polev, A.V. Baranova, * St. Petersburg State University , St. Petersburg, Russia, In silico oncology and the concept of the possible evolutionary role of tumors

 

11:05 am – 11:40 am

Paper No 8

Irena Cosic , Elena Pirigova, Metin Akay* , * Dartmouth College , Hanover , USA , Proteomics and genomics signal processing

 

11:40 am -1:30 pm

Lunch (Lida Hotel)

 

1:30 pm – 2:40 pm

SESSION F

Chair: G. Rechavi

 

1:30 pm – 2:05 pm

Paper No 9

R. Dale, Imperial College and Hammersmith Hospitals, London, UK, Radiobiological modelling of radiotherapy and considerations for chemotherapy

 

2:05 – 2:40

Paper No 10

W. Düchting , University of Siegen, Siegen, Germany, Modelling and simulating tumor growth and treatment at the cellular level. What for? A review from the viewpoint of control theory

 

2:40 pm – 3:00 pm

Coffee Break

 

3:00 pm – 4:10 pm (Upper Floor)

SESSION G

Chair: W. Duechting

 

3:00 pm – 3:35 pm

Paper No 15

E.I. Zacharaki* , G.S. Stamatakos, N.K. Uzunoglu, * National Technical University of Athens, Greece, Computer simulation of tumour spheroid behaviour as a platform for understanding cancer in silico

 

3:35 pm -4:10 pm

Paper No 11

J.R.Alger , University of California at Los Angeles , Los Angeles , USA , Structural and functional evaluation of evolving human brain tumors with magnetic resonance

 

4:10 pm – 5:00 pm (Upper Floor)

Round Table Discussion : Shaping In Silico Oncology: Part II

Chairs: N. Uzunoglu, D. Givol, G. Stamatakos, J. Alger

 

SOCIAL PROGRAMME

 

PLEASE NOTE: Details will be available during the Workshop and well before the events take place.

 

IV. Guided Tour of the Acropolis of Amyclae

 

V. Excursion to Gytheion

 

VI. Dinner at a seaside Greek taverna on the islet/peninsula of Cranae, Gytheion

Return to Sparta

 

-------------------------------------------------------------------------------------------------------------------------

 

SATURDAY, SEPTEMBER 11, 2004

 

 

8:30 am – 9:00 am (Reception Hall)
REGISTRATION

9:00 am – 10:10 am (Upper Floor)

SESSION H

Chair: E. Domany

 

9:00 am – 9:35 am

Paper No 13

N. K. Uzunoglu, National Technical University of Athens, Greece, The ISOG/ICCS/NTUA i n silico model of i n vivo tumour and normal tissue response to radiation therapy and chemotherapy: the principles .

 

9:35 am– 10:10 am

Paper No 14

G. S. Stamatakos , National Technical University of Athens, Greece, The IS OG/ICCS/NTUA i n silico model of in vivo tumour and normal tissue response to radiation therapy and chemotherapy: the modules of the model

 

10:10 am – 10:30 am (Upper Floor)

Coffee Break

 

10:30 am – 11:40 am

SESSION I

Chair: M.Alcalay

 

10:30 am – 11:05 am

Paper No 16

D.D.Dionysiou* , G.S.Stamatakos, N.K.Uzunoglu, *National Technical University of Athens, Greece, A novel spatiotemporal oncological model: Simulating the effect of p53 gene status on glioblastoma multiforme response to radiotherapy

 

11:05 am – 11:40 am

Paper No 17

K. Karamolegou, M. Moschovi* , E. Balafouta, P. Prodromou, D. Dionysiou, G. Stamatakos, N.Uzunoglou, *University of Athens, Athens, Greece, Pediatric glioblastoma multiforme: adapting a four dimensional tumor response to radiotherapy simulation model to real clinical data

 

11:40 am -1:30 pm

Lunch (Lida Hotel)

 

1:30 pm – 2:40 pm

SESSION J

Chair: N. Zamboglou

 

1:30 pm – 2:05 pm

Paper No 18

G.S. Stamatakos* , V.P. Antipas, N.K. Uzunoglu, S. Polychronopoulou, M.Synodinou, *National Technical University of Athens, Athens, Greece, A four dimensional computer simulation model of solid tumor response to chemotherapy in vivo: the paradigm of glioblastoma multiforme treated by temozolomide

 

2:05 pm – 2:40 pm

Paper No 12

Y. Mansury, C. Athale, B. F. Gregor, and T. S. Deisboeck*, *Harvard-MIT (HST) Athinoula Martinos Center, Massachusetts General Hospital, Charlestown, USA, Modeling malignant brain tumors with a novel spatio-temporal agent-based simulation framework

 

2:40 pm – 3:00 pm

Coffee Break

 

3:00 pm – 4:10 pm (Upper Floor)

SESSION K

Chair: M.Moschovi

 

3:00 pm – 3:35 pm

Paper No 19

V. P. Antipas* , G. S. Stamatakos , N. K. Uzunoglu, V. E. Kouloulias, *National Technical University of Athens, Greece, Towards a spatiotemporal simulation of the in vivo response of normal tissues to radiotherapy

 

3:35 pm - 4:10 pm

Paper No 22

N.C.Zamboglou, Klinikum Offenbach and National Technical University of Athens, Offenbach , Germany , Image based systems for radiation oncology

 

4:10 pm – 5:00 pm (Upper Floor)

Round Table Discussion : Shaping In Silico Oncology: Part III

Conclusions, Closing of the Workshop

Chairs: N. Uzunoglu, D. Givol, G. Stamatakos, N. Zamboglou

5:00 – 8:00 Free afternoon

 

8:00 pm : Coach departure to Athens

 

 

 

LOCATION

 

Ancient Sparta with Taygetus in the background

 

The Workshop will take place at Sparta,  a beautiful town with neoclassical buildings near the river Evrotas, located in the south of the Peloponnese. Sparta , known in Greek as Sparti, has a history which dates back to the Neolithic period, at least 3,000 years BC. In parallel with Athens it played a leading role in classical Greek civilization. Modern Sparta , founded in 1834, occupies part of the site of the classical city and is the capital of the department of Laconia . Excavations have uncovered ruins of temples and public buildings as well as a theatre dating from the Roman period. Taygeta, Lacedaemon , Hyacinth, Leda, Castor, Pollux, Menelaus, Helen of Troy, Lycurgus, Chilon (one of the Seven Wise Men of Ancient Greece), Alcman, Leonidas and contemporary photochemist Panos Grammaticakis are some of the worldwide known mythical or historical personalities directly linked with the epic city. The constellations of Cassiopeia also known as Laconian Key, Cygnus and Gemini, the star Taygeta (one of the Pleiades), Jupiter's moon Leda, Saturn's moon Helene and many other celestial bodies and formations are heavenly reminders of the mythical glory of the city. In September 2003 Steven Pressfield, author of Gates of Fire was invited to Sparta where he was officially honoured by the municipality. The Workshop venue will be the Central Library of Sparta (135, Lykourgou St .)

 

Modern Sparta Town Hall

 

The Byzantine city of Mystras , a precursor of the Renaissance and a UNESCO World Heritage Site

 

PROCCEDINGS

 

Accepted extended abstracts are included in the Book of Short Communications (BSC) that will be distributed during the Workshop. The title of the BSC is: N. Uzunoglu, G.Stamatakos, D. Givol Eds, Book of Short Communications, First International Advanced Research Workshop on In Silico Oncology: Advances and Challenges, Sparta, Greece, September 9-10, 2004, Institute of Communications and Computer Systems, National Technical University of Athens, Athens, Greece, 2004

Selected full papers will be included in the Workshop Proceedings volume. More details will be available during the Workshop.

 

PAPER PRESENTATION

 

All paper presentations will be oral. Each speaker (either invited or proferred paper presenter) will be allowed 30 min to make his or her presentation. After completion of each presentation, 5 min will be allowed for discussion.

Both Microsoft Power Point (TM) and overhead projector presentations are acceptable.

Participants may bring their laptops with them. As the main meeting area (round table structure) is equipped with a local network to which a data projector is connected, they may make their presentation from their seats.

The opening ceremony (open to the public) will take place in a room with capacity of approximately 150 seats.

There are about 12 internet connected PCs available.

 

REGISTRATION

 

Proferred paper presenters are requested to pay a registration fee of 100 Euro at the Workshop Reception Desk on Thursday September 9 or on their arrival day. Registration fee payment entitles participants to a Book of Abstracts, an attendance badge, coffees, lunch (9/9, 10/9, 11/9), dinner (9/9, 10/9) and the social programme (excursions etc.). A payment receipt will be provided.

 

ACCOMMODATION

 

Special prices have been arranged in the Hotels Lida ( http://users.otenet.gr/~lidahtl and Menelaion (http://www.menelaion.com/ or http://www.magicaljourneys.com/Sparta/sparta-hotels-menelaion.html) at Sparta . Please provide the indication “1 ST IARWISO” followed by your first and family names during the booking procedure. A hotel room for the night 11 to 12 September should also be booked at a hotel in Athens by proferred paper presenters as the coach will reach Athens late at night on September 11. Special prices have been arranged in the Hotel Dorian Inn
(http://www.greekhotel.com/athens/dorianinn/home.htm or
http://www.dilos.com/hotel/16) . Please provide the above mentioned indication to this hotel too.

For invited speakers arrangements have been made on an individual basis and in line with the invitation letter content. Notification on the final arrangements will be sent to invited speakers by e-mail shortly.

 

PARTICIPANTS' ARRIVAL AND DEPARTURE

 

The Workshop will take place between Thursday 9 th September and Saturday 11 th September 2004 (3 working days) at Sparta , Greece . Wednesday 8 th September will be spent on the participants' arrival at Athens and their subsequent transportation to Sparta (210 Km, 3 hours coach drive approximately).
Sunday 12 th September will be spent on the participants' departure from Athens.

 

PLEASE NOTE: RECEPTION OF INVITED SPEAKERS AT THE ATHENS AIRPORT "ELEFTHERIOS VENIZELOS" AND SUBSEQUENT TRANSPORT TO SPARTA WILL BE ARRANGED ON AN INDIVIDUAL BASIS BY E-MAIL. RELEVANT INFORMATION WILL BE SENT TO INVITED SPEAKERS BY THE ORGANIZING COMMITTEE SHORTLY.

 

 

The picturesque town of Gytheion,
port of both ancient and modern Sparta

 

SPONSORS

 

The Greek Ministry of National Education and Religious Affairs

Institute of Comminication and Computer Systems, National Technical University of Athens

Technical Chamber of Greece

The Demos (Municipality) of Sparta

The Central Library of Sparta

The Alexander Onassis Public Benefit Foundation

The Eugenidis Foundation

The Propontis Foundation

AVENTIS PHARMA AEBE

GENESIS PHARMA A.E.

 

SUPPORTERS

Prefectural Government of Laconia

Fifth Ephorate of Byzantine Antiquities

Laconia Citrus Processing Cooperative

Taygetos Winery - Theodorakakos Estate

 

ACKNOWLEDGEMENTS

The Co-Directors and the Organizing Committee are grateful to D.Dionysiou, PhD, V.Antipas, MSc, and X. Papadomichelaki, Dipl. Eng., MBA, of the Microwave and Fiber Optics Laboratory, School of Electrical and Computer Engineering, National Technical University of Athens, Greece, for their significant support during the organization of the workshop. They also acknowledge the substantial contribution of Mr S. Antonakos, Mayor of Sparta, and Mrs E. Tzinieri-Tzanetakou, Director of the Central Library of Sparta. They thank Mrs M. Papapostolou and Mr N. Georgiadis for the guided tours of ancient Sparta and Byzantine Mystras respectively.

 

 

Eurotas, the Valley of Lacedaemon , Sparta and Taygetus (Photo N.S.Koumaris)